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Beschreibung
A hands-on lab guide in the Python programming language that enables students in the life sciences to reason quantitatively about living systems across scales
This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students-whether from the life sciences, physics, computational sciences, engineering, or mathematics-how to reason quantitatively in the face of uncertainty.
Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities
Encourages good coding practices, clear and understandable modeling, and accessible presentation of results
Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale
Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations
Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own
Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB
This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students-whether from the life sciences, physics, computational sciences, engineering, or mathematics-how to reason quantitatively in the face of uncertainty.
Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities
Encourages good coding practices, clear and understandable modeling, and accessible presentation of results
Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale
Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations
Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own
Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB
A hands-on lab guide in the Python programming language that enables students in the life sciences to reason quantitatively about living systems across scales
This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students-whether from the life sciences, physics, computational sciences, engineering, or mathematics-how to reason quantitatively in the face of uncertainty.
Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities
Encourages good coding practices, clear and understandable modeling, and accessible presentation of results
Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale
Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations
Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own
Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB
This lab guide accompanies the textbook Quantitative Biosciences, providing students with the skills they need to translate biological principles and mathematical concepts into computational models of living systems. This hands-on guide uses a case study approach organized around central questions in the life sciences, introducing landmark advances in the field while teaching students-whether from the life sciences, physics, computational sciences, engineering, or mathematics-how to reason quantitatively in the face of uncertainty.
Draws on real-world case studies in molecular and cellular biosciences, organismal behavior and physiology, and populations and ecological communities
Encourages good coding practices, clear and understandable modeling, and accessible presentation of results
Helps students to develop a diverse repertoire of simulation approaches, enabling them to model at the appropriate scale
Builds practical expertise in a range of methods, including sampling from probability distributions, stochastic branching processes, continuous time modeling, Markov chains, bifurcation analysis, partial differential equations, and agent-based simulations
Bridges the gap between the classroom and research discovery, helping students to think independently, troubleshoot and resolve problems, and embark on research of their own
Stand-alone computational lab guides for Quantitative Biosciences also available in R and MATLAB
Über den Autor
Joshua S. Weitz is professor and the Clark Leadership Chair in Data Analytics in the Department of Biology at the University of Maryland. Previously, he held the Tom and Marie Patton Chair in Biological Sciences at the Georgia Institute of Technology, where he founded the Interdisciplinary Graduate Program in Quantitative Biosciences. He is the author of Quantitative Viral Ecology (Princeton). Nolan English is a postdoctoral researcher at Oak Ridge National Laboratory. Alexander B. Lee is a data scientist with expertise in developing biological models in Python and MATLAB. Ali Zamani is associate data developer at Priceline.
Inhaltsverzeichnis
- Preface
- The goal
- You can do it
- Acknowledgments
- Part I Molecular and Cellular Biosciences
- 1.1 Hands-on approach to mutations and selection
- 1.2 Sampling from provided distributions
- 1.3 Sampling from custom distributions
- 1.4 Comparing binomial and Poisson distributions
- 1.5 The start of dynamics
- 1.6 Inferring parameters from data
- 2.1 Continuous models of cellular dynamics and gene regulation
- 2.2 Simulating coupled ordinary dierential equations
- 2.3 Qualitative analysis of nonlinear dynamical systems
- 2.4 Evaluating the local stability of equilibria
- 2.5 Bistability and bifurcation diagrams
- 3.1 Simulating stochastic gene expression
- 3.2 Poisson processes: Finding the time of the next event
- 3.3 A theory of timing given multiple stochastic processes
- 3.4 Gillespie algorithm applied to a gene expression model
- 3.5 Loading and saving data
- 4.1 Modeling evolutionary dynamics
- 4.2 Transition matrices in Markov processes
- 4.3 The Wright-Fisher model
- Part II Organismal Behavior and Physiology
- 5.1 Toward chemotaxis in single-celled organisms
- 5.2 Enzyme kinetics
- 5.3 Time-dependent functions in dierential equations
- 5.4 Probability distribution redux
- 5.5 E. coli movement
- 6.1 Computational neuroscience
- 6.2 The Hodgkin-Huxley model
- 6.3 Firing without a current
- 6.4 Neuron dynamics: Thresholds in magnitude and time
- 6.5 Technical appendix
- 7.1 Excitable media: From localized to spatial dynamics
- 7.2 FitzHugh-Nagumo: The ODE model
- 7.3 FitzHugh-Nagumo: One-dimensional PDEs
- 8.1 Introduction
- 8.2 The internal origins of movement
- 8.3 Orbits in conguration space
- 8.4 From Borelli to Newton and back again
- 8.5 The greatest gait of all
- Part III Populations and Ecological Communities
- 9.1 Agent-based models and emergence in ocks
- 9.2 The Vicsek model
- 9.3 Flocking dynamics
- 9.4 Bonus: SPP and the power of leadership
- 10.1 Strategies, games, and populations
- 10.2 Mean eld replicator dynamics of microbial games
- 10.3 Stochastic versions of microbial games
- 10.4 Type VI secretion—a killer game, in space
- 11.1 From predation events to population dynamics
- 11.2 Ecological dynamics when evolution is fast
- 11.3 Functional responses—a microscopic approach
- 12.1 Outbreaks: From deterministic models to stochastic realizations
- 12.2 Epidemic model—fundamentals
- 12.3 Stochastic epidemics
- Part IV The Future of Ecosystems
- 13.1 Modeling complexity: An enabling view
- 13.2 Small dierences, big eects
- 13.3 Explosive growth and population catastrophes
- 13.4 Small models of a big climate
- 13.5 Coda
- Bibliography
- Index
Details
| Erscheinungsjahr: | 2024 |
|---|---|
| Fachbereich: | Biophysik |
| Genre: | Biologie, Importe |
| Rubrik: | Naturwissenschaften & Technik |
| Medium: | Taschenbuch |
| Inhalt: | Einband - flex.(Paperback) |
| ISBN-13: | 9780691255675 |
| ISBN-10: | 0691255679 |
| Sprache: | Englisch |
| Einband: | Kartoniert / Broschiert |
| Autor: |
Weitz, Joshua S.
English, Nolan Lee, Alexander B. |
| Hersteller: | Princeton University Press |
| Verantwortliche Person für die EU: | Libri GmbH, Europaallee 1, D-36244 Bad Hersfeld, gpsr@libri.de |
| Maße: | 254 x 203 x 15 mm |
| Von/Mit: | Joshua S. Weitz (u. a.) |
| Erscheinungsdatum: | 30.04.2024 |
| Gewicht: | 0,59 kg |